JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KASH5_chr19_49383249_49422990	0/0	t0004	655	18	17	1	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0005	655	9	7	2	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0006	655	8	8	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0007	655	3	3	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0008	655	3	3	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0009	655	3	0	0	3	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0010	655	1	1	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0011	655	1	1	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0012	655	1	0	0	1	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0013	655	1	0	1	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	t0014	655	1	1	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KAT14_chr20_18132863_18193035	0/0	t0001	1218	130	21	21	68	4	16	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/1	t0002	1218	56	32	10	8	2	3	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0003	1219	53	0	12	32	5	4	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	1/0	t0004	1219	44	24	12	1	1	5	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0005	1219	36	6	15	2	3	10	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0006	1218	7	0	2	1	3	1	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0007	1218	3	2	1	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0008	1219	3	0	1	0	0	2	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0009	1218	2	1	1	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0010	1218	2	0	0	0	0	2	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0011	1219	2	2	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0012	1219	1	1	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0013	1218	1	0	0	0	0	1	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0014	1218	1	1	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0015	1218	1	1	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0016	1218	1	0	0	1	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0017	1218	1	0	1	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0018	1218	1	0	0	1	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	t0019	1219	1	1	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT2A_chr17_42108111_42126367	1/1	t0001	602	330	78	67	126	17	40	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	t0002	602	14	6	0	5	1	2	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	t0003	602	7	7	0	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	t0004	602	1	0	0	1	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	t0005	602	1	0	1	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	t0006	602	1	1	0	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2B_chr3_20035446_20159404	1/0	t0001	1912	169	32	40	57	10	29	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/1	t0002	1912	97	13	17	52	3	11	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0003	1912	46	8	4	34	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0004	1912	21	14	3	0	2	2	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0005	1912	15	15	0	0	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0006	1912	10	0	6	4	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0007	1912	7	1	3	0	3	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0008	1912	2	0	0	2	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0009	1912	2	0	0	2	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0010	1912	1	0	1	0	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0011	1912	1	0	0	1	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0012	1912	1	1	0	0	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0013	1912	1	0	0	1	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	t0014	1912	1	0	0	1	0	0	copy fasta	KAT2B	chr3	20035446	20159404