JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KAT5_chr11_65707252_65724604	1/1	t0001	440	433	91	80	200	18	42	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	t0002	440	3	0	0	3	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	t0003	440	2	2	0	0	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	t0004	440	1	0	0	1	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	t0005	440	1	1	0	0	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	t0006	440	1	0	0	1	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT5_chr11_65707252_65724604	0/0	t0007	440	1	0	0	1	0	0	copy fasta	KAT5	chr11	65707252	65724604
KAT6A_chr8_41924479_42056987	0/0	t0001	3131	51	2	13	34	0	2	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	1/0	t0002	3139	49	0	9	36	1	2	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/1	t0003	3131	38	1	7	22	1	6	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0004	3141	13	1	5	0	2	5	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0005	3131	9	0	1	6	0	2	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0006	3144	9	0	0	7	0	2	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0007	3139	8	7	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0008	3130	6	0	0	6	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0009	3140	6	0	1	3	0	2	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0010	3140	6	2	1	1	0	2	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0011	3139	6	0	2	3	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0012	3142	5	5	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0013	3131	5	0	1	3	1	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0014	3139	5	0	0	5	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0015	3134	4	0	2	0	0	2	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0016	3143	4	4	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0017	3141	4	3	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0018	3131	4	0	2	1	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0019	3134	4	0	0	4	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0020	3141	4	4	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0021	3134	3	0	0	3	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0022	3131	3	0	0	3	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0023	3139	3	2	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0024	3131	2	0	0	2	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0025	3151	2	2	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0026	3134	2	2	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0027	3139	2	1	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0028	3141	2	2	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0029	3134	2	0	1	0	1	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0030	3131	2	1	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0031	3142	2	2	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0032	3144	2	2	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0033	3132	2	1	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0034	3131	2	0	0	2	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0035	3140	2	2	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0036	3133	2	0	1	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0037	3146	2	2	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0038	3132	2	1	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0039	3132	2	0	0	2	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0040	3133	2	0	0	2	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0041	3133	2	0	1	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0042	3145	2	0	0	0	0	2	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0043	3132	2	0	0	2	0	0	copy fasta	KAT6A	chr8	41924479	42056987