JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KAT6A_chr8_41924479_42056987	0/0	t0044	3143	2	0	0	2	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0045	3139	2	1	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0046	3140	2	0	2	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0047	3141	2	0	0	2	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0048	3142	2	0	2	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0049	3142	2	0	2	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0050	3140	2	0	1	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0051	3139	2	0	2	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0052	3145	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0053	3153	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0054	3155	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0055	3139	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0056	3131	1	0	0	0	1	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0057	3151	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0058	3150	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0059	3135	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0060	3139	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0061	3123	1	0	0	0	1	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0062	3144	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0063	3144	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0064	3135	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0065	3133	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0066	3133	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0067	3126	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0068	3143	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0069	3139	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0070	3137	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0071	3139	1	0	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0072	3129	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0073	3130	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0074	3143	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0075	3139	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0076	3139	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0077	3140	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0078	3131	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0079	3131	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0080	3144	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0081	3140	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0082	3133	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0083	3135	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0084	3133	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0085	3141	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0086	3142	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0087	3150	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0088	3141	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0089	3134	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0090	3141	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0091	3139	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0092	3134	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0093	3131	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987