JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KAT6A_chr8_41924479_42056987	0/0	t0094	3144	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0095	3131	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0096	3142	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0097	3140	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0098	3133	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0099	3141	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0100	3144	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0101	3133	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0102	3141	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0103	3139	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0104	3134	1	1	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0105	3142	1	0	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0106	3142	1	0	0	0	1	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0107	3140	1	0	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0108	3141	1	0	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0109	3140	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0110	3139	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0111	3138	1	0	0	0	1	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0112	3142	1	0	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0113	3139	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0114	3139	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0115	3137	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0116	3140	1	0	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0117	3144	1	0	1	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0118	3130	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0119	3140	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	t0120	3139	1	0	0	0	0	1	copy fasta	KAT6A	chr8	41924479	42056987
KAT6B_chr10_74821600_75037624	1/1	t0001	2093	141	36	22	64	2	15	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0002	2092	51	23	9	14	2	3	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0003	2094	34	13	5	7	0	9	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0004	2093	2	0	0	2	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0005	2093	2	2	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0006	2094	1	0	0	0	0	1	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0007	2094	1	0	0	1	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0008	2092	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0009	2092	1	1	0	0	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0010	2093	1	0	0	1	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT6B_chr10_74821600_75037624	0/0	t0011	2093	1	0	0	1	0	0	copy fasta	KAT6B	chr10	74821600	75037624
KAT7_chr17_49783681_49840026	1/0	t0001	7679	63	8	6	38	4	6	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0002	7680	61	8	10	37	1	5	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/1	t0003	7679	28	13	7	1	1	5	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0004	7679	12	2	0	10	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0005	7679	10	0	8	0	0	2	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0006	7681	9	0	1	5	1	2	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0007	7680	8	7	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0008	7680	8	2	1	4	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0009	7681	6	6	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0010	7681	6	0	0	6	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0011	7679	5	4	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0012	7678	5	2	0	3	0	0	copy fasta	KAT7	chr17	49783681	49840026