JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KAT7_chr17_49783681_49840026	0/0	t0013	7681	5	0	0	5	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0014	7680	4	0	1	3	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0015	7681	4	0	2	2	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0016	7682	4	1	0	3	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0017	7680	4	3	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0018	7679	4	0	3	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0019	7679	3	0	0	3	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0020	7678	3	1	2	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0021	7679	3	3	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0022	7680	3	1	0	1	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0023	7682	3	0	3	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0024	7680	3	3	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0025	7680	3	0	1	2	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0026	7680	3	3	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0027	7678	2	0	0	2	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0028	7678	2	2	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0029	7669	2	2	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0030	7679	2	1	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0031	7679	2	2	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0032	7680	2	0	1	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0033	7679	2	0	0	2	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0034	7681	2	1	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0035	7689	2	2	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0036	7679	2	0	0	2	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0037	7679	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0038	7680	1	0	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0039	7678	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0040	7681	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0041	7681	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0042	7679	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0043	7681	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0044	7682	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0045	7679	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0046	7678	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0047	7679	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0048	7679	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0049	7679	1	0	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0050	7679	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0051	7678	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0052	7680	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0053	7679	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0054	7679	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0055	7678	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0056	7680	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0057	7679	1	0	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0058	7679	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0059	7679	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0060	7679	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0061	7679	1	0	0	0	1	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0062	7679	1	0	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026