JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KAT7_chr17_49783681_49840026	0/0	t0063	7679	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0064	7680	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0065	7679	1	0	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0066	7681	1	0	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0067	7679	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0068	7679	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0069	7680	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0070	7682	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0071	7680	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0072	7681	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0073	7680	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0074	7680	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0075	7680	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0076	7680	1	0	0	0	1	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0077	7680	1	0	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0078	7681	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0079	7682	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0080	7690	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0081	7680	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0082	7682	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0083	7680	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0084	7681	1	0	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0085	7680	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0086	7680	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0087	7679	1	0	1	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0088	7679	1	0	0	0	1	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0089	7679	1	0	0	0	0	1	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0090	7666	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0091	7680	1	1	0	0	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT7_chr17_49783681_49840026	0/0	t0092	7679	1	0	0	1	0	0	copy fasta	KAT7	chr17	49783681	49840026
KAT8_chr16_31112664_31136359	1/1	t0001	119	289	87	74	86	12	28	copy fasta	KAT8	chr16	31112664	31136359
KAT8_chr16_31112664_31136359	0/0	t0002	119	1	1	0	0	0	0	copy fasta	KAT8	chr16	31112664	31136359
KATNA1_chr6_149589873_149653714	0/0	t0001	423	184	74	27	56	6	21	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	t0002	423	105	9	26	43	9	18	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	t0003	423	2	0	0	0	0	2	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	t0004	423	2	0	1	0	0	1	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	t0005	423	1	0	0	1	0	0	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	t0006	423	1	0	0	0	1	0	copy fasta	KATNA1	chr6	149589873	149653714
KATNA1_chr6_149589873_149653714	0/0	t0007	423	1	1	0	0	0	0	copy fasta	KATNA1	chr6	149589873	149653714
KATNAL1_chr13_30197630_30312551	0/0	t0001	6108	39	1	2	30	2	4	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0002	6108	25	1	7	13	1	3	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0003	6111	19	0	5	10	1	3	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0004	6123	7	0	5	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0005	6108	6	0	3	0	1	2	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0006	6127	5	0	0	5	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0007	6136	5	0	1	4	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/1	t0008	6113	5	0	1	0	0	3	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0009	6142	4	0	0	4	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0010	6145	4	4	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0011	6110	4	0	0	3	1	0	copy fasta	KATNAL1	chr13	30197630	30312551