JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KATNAL1_chr13_30197630_30312551	0/0	t0012	6122	3	0	0	3	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0013	6125	3	0	1	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0014	6127	3	0	0	3	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0015	6112	3	1	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0016	6100	3	0	0	3	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0017	6136	3	0	0	3	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0018	6134	3	0	0	3	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0019	6133	3	2	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0020	6133	3	0	0	3	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0021	6131	3	0	0	3	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0022	6110	3	0	3	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0023	6133	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0024	6136	2	1	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0025	6134	2	2	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0026	6130	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0027	6129	2	0	2	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0028	6131	2	0	0	0	2	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0029	6125	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0030	6110	2	2	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0031	6110	2	1	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0032	6106	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0033	6108	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0034	6132	2	2	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0035	6140	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0036	6140	2	0	1	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0037	6138	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0038	6138	2	2	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0039	6136	2	0	0	1	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0040	6134	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0041	6132	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0042	6131	2	2	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0043	6138	2	2	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0044	6126	2	2	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0045	6135	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0046	6133	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0047	6129	2	0	1	0	1	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0048	6136	2	0	1	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0049	6103	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0050	6139	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0051	6147	2	2	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0052	6132	2	0	0	2	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0053	6126	2	2	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0054	6110	2	0	2	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0055	6108	2	0	2	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0056	6136	2	0	2	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0057	6133	2	0	0	0	1	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0058	6127	2	0	2	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0059	6107	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0060	6099	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0061	6091	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551