JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KATNAL1_chr13_30197630_30312551	0/0	t0062	6135	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0063	6131	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0064	6134	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0065	6135	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0066	6136	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0067	6134	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0068	6151	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0069	6147	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0070	6145	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0071	6139	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0072	6128	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0073	6134	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0074	6132	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0075	6131	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0076	6127	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0077	6133	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0078	6119	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0079	6142	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0080	6140	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0081	6138	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0082	6138	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0083	6138	1	0	0	0	1	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0084	6126	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0085	6111	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0086	6112	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0087	6104	1	0	0	0	1	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0088	6134	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0089	6112	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0090	6106	1	0	0	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0091	6108	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0092	6125	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0093	6120	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0094	6136	1	0	0	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0095	6146	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0096	6138	1	0	0	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0097	6134	1	0	0	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0098	6130	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0099	6129	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0100	6146	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0101	6144	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0102	6144	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0103	6142	1	0	0	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0104	6140	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0105	6142	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0106	6140	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0107	6138	1	0	0	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0108	6144	1	0	0	0	1	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0109	6140	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0110	6138	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0111	6134	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551