JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KATNAL1_chr13_30197630_30312551	0/0	t0112	6136	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0113	6140	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0114	6138	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0115	6136	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0116	6134	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0117	6136	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0118	6134	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0119	6132	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0120	6132	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0121	6104	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0122	6100	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0123	6108	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0124	6136	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0125	6135	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0126	6131	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0127	6133	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0128	6118	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0129	6112	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	1/0	t0130	6146	1	0	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0131	6120	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0132	6130	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0133	6124	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0134	6118	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0135	6137	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0136	6135	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0137	6127	1	0	0	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0138	6111	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0139	6135	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0140	6127	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0141	6116	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0142	6132	1	0	0	0	1	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0143	6128	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0144	6136	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0145	6116	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0146	6110	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0147	6138	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0148	6131	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0149	6126	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0150	6133	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0151	6145	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0152	6145	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0153	6138	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0154	6136	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0155	6133	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0156	6139	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0157	6132	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0158	6136	1	0	0	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0159	6111	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0160	6111	1	0	0	1	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0161	6149	1	0	0	0	0	1	copy fasta	KATNAL1	chr13	30197630	30312551