JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KATNAL1_chr13_30197630_30312551	0/0	t0212	6129	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0213	6143	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0214	6141	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0215	6129	1	1	0	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNAL1_chr13_30197630_30312551	0/0	t0216	6112	1	0	1	0	0	0	copy fasta	KATNAL1	chr13	30197630	30312551
KATNB1_chr16_57730770_57762244	1/1	t0001	651	320	57	55	160	13	33	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	t0002	651	49	15	9	16	3	6	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	t0003	651	23	17	4	0	0	2	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	t0004	651	4	3	0	0	0	1	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	t0005	651	2	0	0	0	2	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	t0006	651	1	0	0	1	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	t0007	651	1	1	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	t0008	651	1	1	0	0	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNB1_chr16_57730770_57762244	0/0	t0009	651	1	0	0	1	0	0	copy fasta	KATNB1	chr16	57730770	57762244
KATNBL1_chr15_34135674_34215096	0/1	t0001	1825	176	26	31	96	7	15	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	1/0	t0002	1826	126	50	18	40	3	14	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0003	1825	21	0	7	8	2	4	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0004	1826	6	6	0	0	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0005	1826	5	5	0	0	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0006	1826	1	0	0	1	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0007	1826	1	1	0	0	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0008	1826	1	1	0	0	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0009	1825	1	0	0	1	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0010	1825	1	0	0	1	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0011	1825	1	0	0	0	0	1	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0012	1825	1	0	1	0	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0013	1825	1	0	0	1	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0014	1826	1	1	0	0	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNBL1_chr15_34135674_34215096	0/0	t0015	1825	1	0	1	0	0	0	copy fasta	KATNBL1	chr15	34135674	34215096
KATNIP_chr16_27545144_27785344	1/1	t0001	1743	67	24	13	23	3	2	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0002	1743	36	24	6	0	4	2	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0003	1741	22	7	0	15	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0004	1743	16	15	0	0	1	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0005	1736	4	4	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0006	1743	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0007	1743	1	0	0	1	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0008	1743	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0009	1743	1	0	0	1	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0010	1743	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0011	1743	1	0	1	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KATNIP_chr16_27545144_27785344	0/0	t0012	1743	1	1	0	0	0	0	copy fasta	KATNIP	chr16	27545144	27785344
KAZALD1_chr10_101056989_101072059	1/1	t0001	2318	347	46	65	191	13	30	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0002	2318	32	17	9	1	1	4	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0003	2318	23	1	8	1	3	10	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0004	2318	6	0	0	6	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0005	2318	6	5	1	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0006	2318	5	5	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0007	2318	3	3	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0008	2318	3	0	0	2	1	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0009	2318	3	1	0	2	0	0	copy fasta	KAZALD1	chr10	101056989	101072059