JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KAZALD1_chr10_101056989_101072059	0/0	t0010	2330	3	2	1	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0011	2330	3	3	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0012	2318	2	2	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0013	2318	2	0	0	2	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0014	2318	2	0	0	2	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0015	2318	2	0	0	2	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0016	2318	2	2	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0017	2318	1	1	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0018	2318	1	0	0	1	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0019	2318	1	0	0	1	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0020	2318	1	1	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0021	2318	1	1	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0022	2318	1	1	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0023	2318	1	0	0	1	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0024	2318	1	0	0	1	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0025	2318	1	1	0	0	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZALD1_chr10_101056989_101072059	0/0	t0026	2318	1	0	0	1	0	0	copy fasta	KAZALD1	chr10	101056989	101072059
KAZN_chr1_14593685_15123043	0/0	t0001	3722	57	16	15	14	2	10	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0002	3722	28	8	6	5	4	5	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0003	3714	10	9	1	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0004	3722	7	7	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0005	3722	4	2	1	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0006	3718	4	0	2	0	1	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0007	3722	4	0	0	2	1	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0008	3724	3	3	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0009	3722	3	2	1	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0010	3724	3	3	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0011	3722	2	0	0	2	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0012	3722	2	0	0	2	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0013	3722	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0014	3722	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0015	3722	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0016	3722	1	0	1	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0017	3722	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0018	3724	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0019	3722	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0020	3722	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0021	3722	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0022	3722	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0023	3722	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0024	3722	1	0	0	0	0	1	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0025	3722	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0026	3724	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0027	3724	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0028	3722	1	0	1	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0029	3722	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0030	3722	1	0	0	1	0	0	copy fasta	KAZN	chr1	14593685	15123043
KAZN_chr1_14593685_15123043	0/0	t0031	3724	1	1	0	0	0	0	copy fasta	KAZN	chr1	14593685	15123043
KBTBD11_chr8_1968677_2011936	0/0	t0001	5035	117	7	15	78	3	14	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0002	5038	46	0	13	29	2	2	copy fasta	KBTBD11	chr8	1968677	2011936