JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KBTBD11_chr8_1968677_2011936	0/1	t0003	5035	39	2	8	18	2	8	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0004	5038	21	21	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0005	5038	17	0	7	4	0	6	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0006	5038	16	14	1	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0007	5038	13	0	4	3	2	4	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0008	5038	10	9	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0009	5040	9	0	5	0	2	2	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0010	5035	6	0	0	6	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0011	5038	5	5	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0012	5040	4	4	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0013	5040	4	4	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0014	5040	4	3	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0015	5040	4	0	1	0	2	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0016	5040	3	0	3	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0017	5038	3	0	1	1	1	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0018	5038	2	2	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0019	5038	2	1	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0020	5035	2	0	0	0	0	2	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0021	5035	2	0	0	2	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0022	5040	2	0	2	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0023	5038	2	2	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0024	5038	2	0	0	2	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0025	5040	2	2	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0026	5038	2	0	0	2	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0027	5035	2	0	1	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0028	5038	2	2	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0029	5035	1	0	0	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0030	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0031	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0032	5038	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0033	5040	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0034	5050	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0035	5037	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0036	5035	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0037	5035	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0038	5035	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0039	5035	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0040	5035	1	0	0	0	1	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0041	5035	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0042	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0043	5040	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0044	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0045	5040	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0046	5038	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0047	5038	1	0	0	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0048	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0049	5040	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0050	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0051	5038	1	0	0	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0052	5035	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936