JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KBTBD11_chr8_1968677_2011936	0/0	t0053	5038	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0054	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0055	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0056	5035	1	0	0	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0057	5038	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0058	5038	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0059	5035	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0060	5037	1	0	0	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0061	5035	1	0	0	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0062	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0063	5038	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0064	5040	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0065	5038	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0066	5038	1	0	0	0	0	1	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0067	5038	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0068	5038	1	0	0	1	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0069	5038	1	0	0	0	1	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0070	5040	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0071	5038	1	1	0	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0072	5038	1	0	0	0	1	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0073	5038	1	0	1	0	0	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD11_chr8_1968677_2011936	0/0	t0074	5040	1	0	0	0	1	0	copy fasta	KBTBD11	chr8	1968677	2011936
KBTBD12_chr3_127910232_127992666	1/0	t0001	3856	86	13	24	34	4	10	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/1	t0002	3856	84	23	3	46	0	11	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0003	3856	80	2	9	59	4	6	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0004	3856	18	2	2	12	0	2	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0005	3856	18	0	1	13	3	1	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0006	3856	18	5	5	0	1	7	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0007	3856	12	9	3	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0008	3857	11	10	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0009	3856	8	0	0	8	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0010	3856	7	1	3	1	0	2	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0011	3855	6	5	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0012	3857	5	0	0	4	1	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0013	3856	5	5	0	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0014	3856	4	3	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0015	3856	3	1	1	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0016	3856	3	3	0	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0017	3856	2	1	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0018	3856	2	0	0	2	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0019	3856	2	1	0	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0020	3857	2	0	1	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0021	3856	2	0	1	0	1	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0022	3856	2	2	0	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0023	3856	1	0	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0024	3857	1	0	0	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0025	3856	1	0	0	0	0	1	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0026	3856	1	0	0	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0027	3856	1	1	0	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0028	3814	1	0	0	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666