JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KBTBD12_chr3_127910232_127992666	0/0	t0029	3856	1	0	0	0	1	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0030	3856	1	1	0	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0031	3856	1	0	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0032	3856	1	0	0	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0033	3856	1	0	0	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0034	3856	1	1	0	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0035	3856	1	0	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0036	3856	1	0	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0037	3856	1	0	1	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0038	3857	1	1	0	0	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0039	3856	1	0	0	0	0	1	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0040	3856	1	0	0	0	0	1	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0041	3856	1	0	0	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0042	3856	1	0	0	0	1	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0043	3856	1	0	0	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD12_chr3_127910232_127992666	0/0	t0044	3856	1	0	0	1	0	0	copy fasta	KBTBD12	chr3	127910232	127992666
KBTBD13_chr15_65071746_65084948	0/0	t0001	1827	192	47	35	86	9	15	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/1	t0002	1827	108	13	22	48	6	18	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	1/0	t0003	1827	32	15	9	4	1	2	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0004	1827	11	0	0	11	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0005	1827	8	7	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0006	1827	6	6	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0007	1827	6	1	3	0	1	1	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0008	1827	6	0	3	3	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0009	1827	2	0	2	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0010	1827	2	2	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0011	1827	2	0	0	2	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0012	1827	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0013	1827	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0014	1827	1	1	0	0	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0015	1816	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0016	1827	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0017	1827	1	0	0	0	1	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD13_chr15_65071746_65084948	0/0	t0018	1827	1	0	0	1	0	0	copy fasta	KBTBD13	chr15	65071746	65084948
KBTBD2_chr7_32863172_32896760	0/1	t0001	1737	257	75	48	99	4	30	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0002	1737	94	2	14	65	4	9	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0003	1737	45	0	3	34	2	6	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	1/0	t0004	1737	11	8	2	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0005	1737	5	0	0	5	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0006	1737	3	3	0	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0007	1737	2	0	1	0	0	1	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0008	1737	2	0	2	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0009	1737	2	0	0	2	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0010	1737	1	0	1	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0011	1748	1	0	0	1	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0012	1737	1	0	1	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0013	1737	1	0	0	1	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0014	1737	1	1	0	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0015	1737	1	0	0	1	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0016	1737	1	1	0	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760