JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KBTBD2_chr7_32863172_32896760	0/0	t0017	1737	1	0	1	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0018	1737	1	0	1	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0019	1737	1	1	0	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0020	1737	1	0	0	0	0	1	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0021	1737	1	0	0	0	0	1	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD2_chr7_32863172_32896760	0/0	t0022	1737	1	1	0	0	0	0	copy fasta	KBTBD2	chr7	32863172	32896760
KBTBD3_chr11_106046098_106082347	0/1	t0001	2003	184	27	32	95	5	24	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0002	2002	75	3	9	56	2	5	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0003	2002	18	2	3	7	2	4	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0004	2002	18	10	7	1	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	1/0	t0005	2002	12	7	0	4	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0006	2003	11	4	3	2	1	1	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0007	2002	11	5	0	4	0	2	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0008	2002	5	5	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0009	2002	5	5	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0010	2002	4	1	2	0	0	1	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0011	2003	4	3	1	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0012	2002	3	1	1	1	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0013	2002	3	3	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0014	2001	3	2	1	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0015	2003	2	0	0	2	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0016	2003	2	0	2	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0017	2002	2	0	2	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0018	2003	1	0	0	0	0	1	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0019	2003	1	1	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0020	2003	1	0	1	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD3_chr11_106046098_106082347	0/0	t0021	2003	1	1	0	0	0	0	copy fasta	KBTBD3	chr11	106046098	106082347
KBTBD4_chr11_47567197_47583970	0/1	t0001	753	406	84	73	192	16	40	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	1/0	t0002	753	4	3	0	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	t0003	753	2	0	2	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	t0004	753	1	0	1	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD4_chr11_47567197_47583970	0/0	t0005	753	1	1	0	0	0	0	copy fasta	KBTBD4	chr11	47567197	47583970
KBTBD6_chr13_41122569_41137802	0/0	t0001	3205	85	31	3	50	0	1	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0002	3208	75	29	3	40	0	3	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/1	t0003	3205	69	9	17	27	10	5	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0004	3206	66	1	15	39	1	10	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0005	3208	16	0	1	8	1	6	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0006	3207	9	2	1	6	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0007	3209	8	2	0	5	0	1	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	1/0	t0008	3210	7	6	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0009	3210	2	1	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0010	3208	2	1	1	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0011	3205	2	0	1	0	0	1	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0012	3208	2	0	0	2	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0013	3208	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0014	3205	1	1	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0015	3206	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0016	3209	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0017	3209	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0018	3208	1	1	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802