JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KBTBD6_chr13_41122569_41137802	0/0	t0019	3208	1	1	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0020	3208	1	0	1	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0021	3208	1	0	1	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0022	3208	1	1	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0023	3184	1	0	0	0	0	1	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0024	3205	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0025	3205	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0026	3205	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0027	3208	1	1	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0028	3205	1	0	0	1	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD6_chr13_41122569_41137802	0/0	t0029	3205	1	1	0	0	0	0	copy fasta	KBTBD6	chr13	41122569	41137802
KBTBD7_chr13_41184834_41199569	0/1	t0001	2680	141	2	44	66	11	17	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0002	2681	85	26	6	41	1	11	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	1/0	t0003	2682	70	20	4	42	0	3	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0004	2682	28	8	3	15	0	2	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0005	2683	25	10	2	13	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0006	2681	17	0	5	10	0	2	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0007	2680	15	1	9	0	3	2	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0008	2679	14	1	2	8	0	3	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0009	2681	10	1	2	6	0	1	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0010	2682	7	0	0	7	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0011	2682	7	7	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0012	2682	6	1	0	3	0	2	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0013	2680	3	0	0	3	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0014	2680	3	0	0	2	0	1	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0015	2680	2	2	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0016	2682	2	2	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0017	2681	2	2	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0018	2680	2	0	0	2	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0019	2682	2	1	1	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0020	2681	2	0	1	0	1	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0021	2683	2	0	2	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0022	2682	1	1	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0023	2683	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0024	2682	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0025	2682	1	1	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0026	2681	1	1	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0027	2682	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0028	2682	1	1	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0029	2681	1	1	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0030	2681	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0031	2682	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0032	2683	1	0	1	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0033	2682	1	1	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0034	2681	1	0	1	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0035	2680	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0036	2680	1	0	1	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0037	2678	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0038	2682	1	0	0	1	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD7_chr13_41184834_41199569	0/0	t0039	2678	1	1	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569