JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KBTBD7_chr13_41184834_41199569	0/0	t0040	2678	1	1	0	0	0	0	copy fasta	KBTBD7	chr13	41184834	41199569
KBTBD8_chr3_66993307_67016210	0/0	t0001	2875	138	42	15	65	5	11	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0002	2874	114	2	27	61	2	22	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0003	2875	38	3	20	10	2	3	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	1/1	t0004	2875	20	4	8	1	3	2	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0005	2875	15	15	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0006	2874	9	0	0	9	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0007	2876	7	7	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0008	2875	6	6	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0009	2875	5	0	4	1	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0010	2874	5	1	1	3	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0011	2875	4	1	0	0	0	3	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0012	2875	3	3	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0013	2874	3	0	0	3	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0014	2875	3	0	0	3	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0015	2874	2	0	2	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0016	2875	2	2	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0017	2875	1	0	0	1	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0018	2875	1	0	0	0	0	1	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0019	2875	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0020	2875	1	0	0	0	0	1	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0021	2875	1	0	0	0	0	1	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0022	2874	1	0	0	0	1	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0023	2875	1	0	0	0	1	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0024	2875	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0025	2875	1	0	0	1	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0026	2875	1	0	1	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0027	2875	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0028	2875	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0029	2875	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0030	2875	1	1	0	0	0	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0031	2875	1	0	0	0	1	0	copy fasta	KBTBD8	chr3	66993307	67016210
KBTBD8_chr3_66993307_67016210	0/0	t0032	2875	1	0	0	0	1	0	copy fasta	KBTBD8	chr3	66993307	67016210
KCMF1_chr2_84966161_85064472	0/1	t0001	6355	65	6	12	36	1	9	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	1/0	t0002	6355	56	19	8	18	3	7	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0003	6352	30	0	2	24	0	4	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0004	6352	8	0	1	7	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0005	6355	6	6	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0006	6355	6	0	3	1	2	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0007	6371	5	0	4	0	0	1	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0008	6352	5	0	0	5	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0009	6355	4	0	4	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0010	6354	4	4	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0011	6358	3	2	1	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0012	6356	3	3	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0013	6353	3	0	0	2	1	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0014	6352	3	3	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0015	6352	3	3	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0016	6358	2	1	1	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0017	6353	2	2	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472