JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCMF1_chr2_84966161_85064472	0/0	t0068	6355	1	0	0	1	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0069	6357	1	1	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0070	6357	1	1	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0071	6356	1	1	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0072	6357	1	1	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0073	6356	1	1	0	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0074	6353	1	0	1	0	0	0	copy fasta	KCMF1	chr2	84966161	85064472
KCMF1_chr2_84966161_85064472	0/0	t0075	6355	1	0	0	0	0	1	copy fasta	KCMF1	chr2	84966161	85064472
KCNA10_chr1_110512217_110524175	1/1	t0001	424	345	72	64	153	16	38	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	t0002	424	100	20	18	57	0	5	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	t0003	424	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	t0004	424	1	0	0	0	0	1	copy fasta	KCNA10	chr1	110512217	110524175
KCNA10_chr1_110512217_110524175	0/0	t0005	424	1	1	0	0	0	0	copy fasta	KCNA10	chr1	110512217	110524175
KCNA1_chr12_4904905_4923256	0/0	t0001	6498	130	27	21	66	3	13	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0002	6498	57	2	8	35	2	10	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	1/0	t0003	6498	37	1	6	13	4	12	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0004	6496	19	0	0	18	0	1	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0005	6496	18	2	8	6	2	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0006	6496	13	2	0	11	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0007	6498	12	12	0	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0008	6498	10	1	1	7	0	1	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/1	t0009	6498	9	0	4	0	1	3	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0010	6498	8	1	4	3	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0011	6498	8	8	0	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0012	6498	7	5	2	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0013	6496	7	0	0	7	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0014	6498	5	2	0	3	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0015	6496	5	0	3	1	1	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0016	6498	5	0	4	0	1	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0017	6498	5	0	0	5	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0018	6498	4	4	0	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0019	6498	3	3	0	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0020	6498	3	2	1	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0021	6498	3	0	0	2	0	1	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0022	6498	3	0	0	3	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0023	6498	3	1	2	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0024	6498	3	1	1	0	1	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0025	6498	2	1	1	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0026	6498	2	2	0	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0027	6498	2	1	0	0	1	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0028	6498	2	2	0	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0029	6498	2	1	0	1	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0030	6498	2	0	0	2	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0031	6498	2	0	2	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0032	6498	2	0	2	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0033	6498	2	2	0	0	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0034	6498	2	0	0	1	0	1	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0035	6498	2	0	1	1	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0036	6498	2	0	0	2	0	0	copy fasta	KCNA1	chr12	4904905	4923256
KCNA1_chr12_4904905_4923256	0/0	t0037	6482	1	0	0	1	0	0	copy fasta	KCNA1	chr12	4904905	4923256