JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNA2_chr1_110588580_110611358	0/0	t0003	10339	14	2	6	6	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0004	10343	13	0	0	12	1	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0005	10332	10	0	0	9	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0006	10336	9	9	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0007	10332	8	0	3	3	1	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0008	10335	8	0	0	8	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0009	10332	7	0	0	7	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0010	10330	7	6	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0011	10330	7	3	2	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0012	10332	6	0	0	6	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0013	10338	5	0	3	0	0	2	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0014	10330	5	0	0	5	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0015	10328	5	1	2	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0016	10337	5	0	1	4	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0017	10332	5	5	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0018	10340	4	0	0	4	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0019	10342	4	0	1	3	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0020	10332	4	0	0	4	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0021	10334	4	0	2	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0022	10332	4	0	0	4	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0023	10343	4	0	0	4	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0024	10341	4	0	0	4	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0025	10341	4	0	0	4	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0026	10337	4	1	0	3	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0027	10330	3	1	0	0	0	2	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/1	t0028	10338	3	0	0	0	2	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0029	10342	3	0	3	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	1/0	t0030	10330	3	1	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0031	10336	3	0	0	2	1	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0032	10332	3	0	1	1	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0033	10332	3	0	0	3	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0034	10332	3	0	0	3	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0035	10332	3	0	0	3	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0036	10330	3	0	2	0	1	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0037	10330	3	2	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0038	10326	3	0	2	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0039	10345	3	0	0	3	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0040	10341	3	0	0	1	0	2	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0041	10341	3	0	0	2	1	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0042	10339	3	0	1	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0043	10339	3	0	0	1	0	2	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0044	10343	3	3	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0045	10330	2	0	0	0	0	2	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0046	10340	2	0	2	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0047	10338	2	0	2	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0048	10332	2	0	1	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0049	10332	2	0	0	0	0	2	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0050	10332	2	0	0	0	0	2	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0051	10334	2	0	0	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0052	10334	2	0	2	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358