JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNA2_chr1_110588580_110611358	0/0	t0053	10332	2	0	2	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0054	10334	2	0	0	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0055	10330	2	1	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0056	10330	2	0	0	0	0	2	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0057	10330	2	2	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0058	10330	2	0	0	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0059	10334	2	2	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0060	10332	2	0	0	0	1	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0061	10324	2	2	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0062	10341	2	0	0	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0063	10341	2	0	0	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0064	10341	2	0	0	0	0	2	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0065	10339	2	0	0	1	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0066	10339	2	1	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0067	10339	2	0	1	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0068	10337	2	0	0	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0069	10335	2	0	0	2	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0070	10324	2	2	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0071	10328	2	2	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0072	10325	2	2	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0073	10332	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0074	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0075	10326	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0076	10332	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0077	10326	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0078	10330	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0079	10338	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0080	10364	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0081	10326	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0082	10335	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0083	10344	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0084	10344	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0085	10340	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0086	10338	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0087	10340	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0088	10340	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0089	10340	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0090	10334	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0091	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0092	10336	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0093	10330	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0094	10330	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0095	10332	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0096	10334	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0097	10342	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0098	10342	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0099	10342	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0100	10332	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0101	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0102	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358