JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNA2_chr1_110588580_110611358	0/0	t0103	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0104	10332	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0105	10332	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0106	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0107	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0108	10340	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0109	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0110	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0111	10332	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0112	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0113	10334	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0114	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0115	10334	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0116	10334	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0117	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0118	10332	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0119	10330	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0120	10338	1	0	0	0	1	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0121	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0122	10332	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0123	10330	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0124	10330	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0125	10330	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0126	10332	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0127	10332	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0128	10332	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0129	10330	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0130	10330	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0131	10338	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0132	10332	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0133	10328	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0134	10328	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0135	10328	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0136	10328	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0137	10328	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0138	10330	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0139	10328	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0140	10326	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0141	10336	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0142	10336	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0143	10334	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0144	10328	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0145	10326	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0146	10326	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0147	10328	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0148	10320	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0149	10320	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0150	10320	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0151	10332	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0152	10330	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358