JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNA2_chr1_110588580_110611358	0/0	t0153	10330	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0154	10332	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0155	10332	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0156	10332	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0157	10322	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0158	10334	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0159	10328	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0160	10330	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0161	10330	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0162	10339	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0163	10347	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0164	10343	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0165	10343	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0166	10341	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0167	10341	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0168	10339	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0169	10341	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0170	10339	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0171	10341	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0172	10339	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0173	10339	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0174	10339	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0175	10339	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0176	10339	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0177	10337	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0178	10337	1	0	1	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0179	10337	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0180	10337	1	0	0	0	0	1	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0181	10335	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0182	10337	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0183	10337	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0184	10335	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0185	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0186	10334	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0187	10332	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0188	10332	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0189	10328	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0190	10332	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0191	10332	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0192	10332	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0193	10324	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0194	10324	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0195	10326	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0196	10343	1	1	0	0	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0197	10334	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA2_chr1_110588580_110611358	0/0	t0198	10332	1	0	0	1	0	0	copy fasta	KCNA2	chr1	110588580	110611358
KCNA3_chr1_110667465_110679940	0/1	t0001	749	267	58	50	124	12	22	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	t0002	751	149	22	21	84	4	18	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	1/0	t0003	749	12	11	0	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	t0004	751	1	0	0	1	0	0	copy fasta	KCNA3	chr1	110667465	110679940