JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNA3_chr1_110667465_110679940	0/0	t0005	749	1	1	0	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	t0006	749	1	0	1	0	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA3_chr1_110667465_110679940	0/0	t0007	751	1	0	0	1	0	0	copy fasta	KCNA3	chr1	110667465	110679940
KCNA4_chr11_30004730_30022030	1/1	t0001	2229	371	84	66	161	15	43	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0002	2229	4	0	2	1	0	1	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0003	2229	3	0	1	0	1	1	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0004	2229	2	2	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0005	2229	2	0	0	1	0	1	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0006	2229	2	0	0	2	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0007	2229	2	0	0	2	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0008	2229	1	1	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0009	2229	1	1	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0010	2229	1	1	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0011	2229	1	0	1	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0012	2229	1	0	0	1	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA4_chr11_30004730_30022030	0/0	t0013	2229	1	1	0	0	0	0	copy fasta	KCNA4	chr11	30004730	30022030
KCNA5_chr12_5038879_5051788	0/0	t0001	1069	227	44	36	113	5	29	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/1	t0002	1069	130	6	27	79	5	12	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	1/0	t0003	1069	75	34	19	10	6	5	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	t0004	1069	12	11	1	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	t0005	1069	3	0	0	3	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	t0006	1069	3	3	0	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	t0007	1069	1	0	0	1	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA5_chr12_5038879_5051788	0/0	t0008	1069	1	0	1	0	0	0	copy fasta	KCNA5	chr12	5038879	5051788
KCNA6_chr12_4804334_4818318	0/0	t0001	2396	124	15	27	57	1	24	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	1/0	t0002	2396	64	6	6	47	3	1	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0003	2397	63	12	4	40	0	7	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0004	2397	58	0	6	46	0	6	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0005	2396	34	12	12	2	4	4	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0006	2397	28	9	10	3	3	3	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0007	2396	15	15	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0008	2397	11	10	1	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/1	t0009	2397	8	1	6	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0010	2397	4	0	0	4	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0011	2397	3	3	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0012	2396	3	3	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0013	2396	2	0	0	2	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0014	2396	2	2	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0015	2397	2	0	0	2	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0016	2397	2	0	0	2	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0017	2397	2	2	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0018	2396	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0019	2396	1	1	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0020	2396	1	1	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0021	2396	1	1	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0022	2396	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0023	2396	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0024	2396	1	1	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0025	2396	1	1	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0026	2397	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318