JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNA6_chr12_4804334_4818318	0/0	t0027	2396	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0028	2303	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0029	2396	1	0	0	0	0	1	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0030	2397	1	0	0	0	0	1	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0031	2397	1	1	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0032	2397	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0033	2397	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0034	2396	1	1	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0035	2397	1	1	0	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0036	2397	1	0	0	0	0	1	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0037	2396	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0038	2397	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0039	2396	1	0	1	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0040	2396	1	0	1	0	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0041	2396	1	0	0	1	0	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA6_chr12_4804334_4818318	0/0	t0042	2397	1	0	0	0	1	0	copy fasta	KCNA6	chr12	4804334	4818318
KCNA7_chr19_49062397_49077699	1/0	t0001	2781	171	34	27	92	4	13	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0002	2787	42	3	14	5	4	16	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/1	t0003	2786	40	0	8	23	4	4	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0004	2779	38	19	8	5	0	6	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0005	2781	11	1	2	8	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0006	2781	9	0	0	7	0	2	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0007	2786	8	6	2	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0008	2786	8	5	3	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0009	2779	8	7	1	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0010	2786	7	0	0	7	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0011	2781	7	0	3	4	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0012	2781	4	0	0	4	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0013	2781	4	0	0	4	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0014	2786	4	2	2	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0015	2786	4	4	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0016	2784	4	2	2	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0017	2781	3	0	0	0	0	3	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0018	2787	3	3	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0019	2779	2	0	0	2	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0020	2779	2	1	1	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0021	2781	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0022	2786	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0023	2787	1	0	1	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0024	2786	1	0	0	0	0	1	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0025	2786	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0026	2787	1	0	0	0	0	1	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0027	2787	1	0	0	0	0	1	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0028	2781	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0029	2786	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0030	2786	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0031	2786	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0032	2781	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0033	2786	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0034	2786	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699