Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANO6_chr12_45211095_45437349	0/0	t0014	3295	2	2	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0015	3266	1	0	0	1	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0016	3266	1	0	0	0	1	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0017	3266	1	0	0	1	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0018	3261	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0019	3266	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0020	3266	1	0	1	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0021	3266	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0022	3266	1	0	1	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0023	3267	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0024	3266	1	0	0	1	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	t0025	3266	1	0	0	0	0	1	copy fasta	ANO6	chr12	45211095	45437349
ANO7_chr2_241183677_241230976	1/0	t0001	1921	164	43	19	85	4	12	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/1	t0002	1921	32	2	5	18	1	5	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0003	1921	29	5	18	0	3	3	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0004	1921	27	0	7	17	0	3	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0005	1921	23	0	4	13	3	3	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0006	1920	20	1	0	13	1	5	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0007	1921	18	0	12	6	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0008	1920	18	13	0	0	0	5	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0009	1921	8	7	1	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0010	1921	7	5	1	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0011	1921	5	3	1	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0012	1921	4	0	1	1	2	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0013	1921	4	2	2	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0014	1921	3	0	1	0	1	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0015	1920	3	1	0	1	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0016	1921	2	2	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0017	1920	2	2	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0018	1920	2	1	1	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0019	1921	2	2	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0020	1921	2	0	0	1	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0021	1920	2	2	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0022	1920	2	0	2	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0023	1921	2	0	0	2	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0024	1921	1	0	0	1	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0025	1921	1	0	1	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0026	1920	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0027	1921	1	0	0	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0028	1920	1	0	0	1	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0029	1921	1	0	0	1	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0030	1920	1	0	0	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0031	1920	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0032	1921	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0033	1921	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0034	1920	1	0	0	0	1	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0035	1921	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0036	1920	1	0	0	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0037	1920	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	t0038	1921	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976