JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNA7_chr19_49062397_49077699	0/0	t0035	2781	1	1	0	0	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0036	2780	1	0	0	1	0	0	copy fasta	KCNA7	chr19	49062397	49077699
KCNA7_chr19_49062397_49077699	0/0	t0037	2779	1	0	0	0	0	1	copy fasta	KCNA7	chr19	49062397	49077699
KCNAB1_chr3_156115578_156543605	0/0	t0001	1888	74	51	11	6	0	6	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0002	1892	13	6	0	3	0	4	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0003	1888	11	7	3	1	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0004	1891	7	5	0	1	0	1	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0005	1893	6	4	1	1	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0006	1893	3	3	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0007	1893	2	2	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0008	1890	2	2	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0009	1889	2	0	0	2	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0010	1892	1	1	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0011	1893	1	0	1	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0012	1888	1	1	0	0	0	0	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB1_chr3_156115578_156543605	0/0	t0013	1888	1	0	0	0	0	1	copy fasta	KCNAB1	chr3	156115578	156543605
KCNAB2_chr1_6040888_6106180	0/1	t0001	2931	105	43	24	20	8	9	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0002	2931	63	0	8	42	5	8	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0003	2931	52	2	2	38	1	9	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	1/0	t0004	2929	46	15	20	0	1	9	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0005	2931	43	7	6	18	2	10	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0006	2931	6	6	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0007	2931	6	3	2	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0008	2929	3	0	3	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0009	2931	2	0	0	2	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0010	2931	2	0	2	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0011	2929	2	2	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0012	2931	2	2	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0013	2931	2	0	0	2	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0014	2929	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0015	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0016	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0017	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0018	2917	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0019	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0020	2931	1	0	1	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0021	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0022	2929	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0023	2929	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0024	2929	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0025	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0026	2931	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0027	2931	1	0	0	0	0	1	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0028	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0029	2931	1	0	0	0	1	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0030	2931	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0031	2929	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0032	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0033	2931	1	0	0	0	0	1	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0034	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180