JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNAB2_chr1_6040888_6106180	0/0	t0035	2931	1	0	0	0	0	1	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0036	2931	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0037	2931	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0038	2931	1	1	0	0	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB2_chr1_6040888_6106180	0/0	t0039	2931	1	0	0	1	0	0	copy fasta	KCNAB2	chr1	6040888	6106180
KCNAB3_chr17_7916859_7934856	0/1	t0001	1665	173	52	25	75	3	17	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0002	1664	71	3	12	50	0	6	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	1/0	t0003	1665	61	30	19	0	5	6	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0004	1665	35	0	0	33	0	2	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0005	1665	21	1	2	18	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0006	1664	10	1	5	3	0	1	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0007	1665	10	0	1	9	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0008	1665	7	4	1	0	0	2	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0009	1665	4	1	3	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0010	1665	3	0	2	0	1	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0011	1665	3	0	1	0	2	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0012	1665	3	0	0	3	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0013	1664	2	0	0	2	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0014	1665	2	0	2	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0015	1665	2	0	0	0	0	2	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0016	1665	2	2	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0017	1665	2	2	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0018	1665	2	0	0	0	1	1	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0019	1664	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0020	1664	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0021	1665	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0022	1665	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0023	1665	1	0	0	0	0	1	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0024	1665	1	0	0	0	1	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0025	1665	1	0	0	0	1	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0026	1665	1	1	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0027	1665	1	0	1	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0028	1665	1	1	0	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0029	1665	1	0	1	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0030	1665	1	0	0	0	0	1	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0031	1665	1	0	0	1	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0032	1665	1	0	1	0	0	0	copy fasta	KCNAB3	chr17	7916859	7934856
KCNAB3_chr17_7916859_7934856	0/0	t0033	1665	1	0	0	0	0	1	copy fasta	KCNAB3	chr17	7916859	7934856
KCNB1_chr20_49358877_49487668	0/0	t0001	9293	17	3	3	7	2	2	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0002	9291	15	4	5	2	1	3	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0003	9307	14	0	4	7	0	3	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0004	9293	13	7	1	4	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0005	9285	13	0	0	11	0	2	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0006	9295	9	4	4	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0007	9305	7	0	1	5	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0008	9291	7	0	0	7	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	1/0	t0009	9295	6	0	0	1	1	3	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0010	9295	6	5	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0011	9303	5	0	1	2	1	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0012	9291	4	4	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668