JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNB1_chr20_49358877_49487668	0/0	t0013	9293	4	1	2	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0014	9295	4	0	0	4	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0015	9295	4	0	2	0	2	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0016	9295	4	3	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0017	9309	3	0	0	3	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0018	9309	3	1	0	2	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0019	9294	3	3	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0020	9293	3	0	1	0	0	2	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0021	9309	3	0	2	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0022	9311	3	0	0	0	1	2	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0023	9283	2	2	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0024	9305	2	2	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0025	9307	2	0	2	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0026	9308	2	0	0	1	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0027	9293	2	1	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0028	9289	2	2	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0029	9293	2	0	2	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0030	9298	2	0	0	0	0	2	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0031	9291	2	0	0	0	2	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0032	9289	2	1	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0033	9289	2	0	1	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0034	9311	2	2	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0035	9295	2	2	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0036	9297	2	2	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0037	9317	2	0	1	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/1	t0038	9291	2	0	0	0	1	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0039	9287	2	0	0	2	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0040	9291	2	2	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0041	9293	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0042	9289	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0043	9307	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0044	9309	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0045	9307	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0046	9307	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0047	9306	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0048	9306	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0049	9300	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0050	9310	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0051	9299	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0052	9303	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0053	9295	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0054	9297	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0055	9303	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0056	9299	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0057	9304	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0058	9305	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0059	9305	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0060	9305	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0061	9307	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0062	9309	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668