JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNB1_chr20_49358877_49487668	0/0	t0113	9315	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0114	9315	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0115	9317	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0116	9313	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0117	9315	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0118	9319	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0119	9293	1	0	0	0	0	1	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0120	9289	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0121	9294	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0122	9293	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0123	9305	1	0	1	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0124	9307	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0125	9295	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0126	9299	1	1	0	0	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0127	9285	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0128	9293	1	0	0	0	1	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0129	9284	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0130	9285	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0131	9285	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB1_chr20_49358877_49487668	0/0	t0132	9295	1	0	0	1	0	0	copy fasta	KCNB1	chr20	49358877	49487668
KCNB2_chr8_72532225_72943349	0/0	t0001	1013	67	28	14	14	2	9	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	t0002	1006	36	11	5	12	1	7	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	t0003	1013	35	3	10	10	1	11	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	t0004	1013	17	14	1	0	1	1	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	t0005	1013	5	5	0	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	t0006	1006	1	0	0	0	1	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	t0007	1013	1	0	1	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	t0008	1013	1	1	0	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNB2_chr8_72532225_72943349	0/0	t0009	1003	1	0	1	0	0	0	copy fasta	KCNB2	chr8	72532225	72943349
KCNC1_chr11_17729781_17788057	1/0	t0001	2546	194	41	35	93	10	14	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0002	2546	37	9	5	11	1	11	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0003	2546	31	22	6	0	3	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0004	2546	11	3	1	0	0	7	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0005	2546	8	3	3	0	1	1	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0006	2546	7	0	5	0	1	1	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0007	2547	7	0	0	7	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0008	2546	5	3	0	0	2	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0009	2546	3	0	1	0	0	2	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/1	t0010	2546	2	0	1	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0011	2546	2	2	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0012	2545	2	2	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0013	2546	2	0	0	0	0	2	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0014	2545	2	2	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0015	2546	1	0	1	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0016	2546	1	0	1	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0017	2546	1	0	1	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0018	2546	1	0	0	1	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0019	2546	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0020	2546	1	0	0	1	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0021	2546	1	0	0	1	0	0	copy fasta	KCNC1	chr11	17729781	17788057