JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNC1_chr11_17729781_17788057	0/0	t0022	2546	1	0	0	0	0	1	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0023	2546	1	0	0	0	0	1	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0024	2546	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0025	2545	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0026	2546	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0027	2534	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0028	2546	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0029	2534	1	0	0	1	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0030	2546	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0031	2546	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0032	2546	1	1	0	0	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC1_chr11_17729781_17788057	0/0	t0033	2546	1	0	0	1	0	0	copy fasta	KCNC1	chr11	17729781	17788057
KCNC2_chr12_75035078_75214839	1/0	t0001	3680	182	31	26	91	7	26	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0002	3680	47	6	8	29	2	2	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0003	3680	14	0	1	13	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0004	3680	5	0	3	0	0	2	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0005	3680	5	5	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0006	3680	5	5	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0007	3681	4	4	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0008	3680	4	4	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0009	3681	4	3	1	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0010	3679	4	3	1	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0011	3680	3	3	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/1	t0012	3680	3	0	1	0	1	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0013	3680	2	2	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0014	3679	2	2	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0015	3681	2	2	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0016	3680	2	0	0	2	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0017	3680	2	2	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0018	3680	2	2	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0019	3680	2	2	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0020	3680	2	2	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0021	3680	2	2	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0022	3668	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0023	3681	1	1	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0024	3680	1	1	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0025	3680	1	0	1	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0026	3680	1	0	0	0	0	1	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0027	3680	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0028	3680	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0029	3680	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0030	3681	1	1	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0031	3681	1	1	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0032	3680	1	1	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0033	3680	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0034	3680	1	0	0	0	0	1	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0035	3680	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0036	3680	1	0	0	1	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0037	3681	1	1	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC2_chr12_75035078_75214839	0/0	t0038	3680	1	1	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839