JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNC2_chr12_75035078_75214839	0/0	t0039	3680	1	1	0	0	0	0	copy fasta	KCNC2	chr12	75035078	75214839
KCNC3_chr19_50306937_50334377	0/0	t0001	4477	84	1	15	53	3	12	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0002	4475	30	3	3	17	0	7	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0003	4477	23	0	6	16	1	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0004	4478	20	2	9	8	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0005	4477	17	1	6	7	2	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	1/0	t0006	4474	12	8	2	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0007	4480	10	0	2	0	4	4	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0008	4478	7	5	2	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0009	4475	6	6	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0010	4478	6	0	0	6	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0011	4476	5	1	1	3	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0012	4477	5	4	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0013	4480	4	0	3	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0014	4478	4	1	1	1	1	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0015	4472	4	4	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0016	4477	4	0	0	4	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/1	t0017	4479	4	0	1	0	0	2	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0018	4480	4	0	1	2	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0019	4476	4	1	3	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0020	4476	4	0	2	1	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0021	4478	4	1	1	0	2	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0022	4476	4	3	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0023	4473	3	3	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0024	4470	3	3	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0025	4478	3	0	1	0	0	2	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0026	4477	3	2	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0027	4478	2	0	0	0	0	2	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0028	4479	2	2	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0029	4477	2	0	0	2	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0030	4477	2	0	0	2	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0031	4479	2	0	0	1	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0032	4479	2	2	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0033	4472	2	2	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0034	4474	2	2	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0035	4475	2	1	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0036	4469	2	2	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0037	4479	2	1	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0038	4478	2	0	0	0	0	2	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0039	4474	2	2	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0040	4476	2	0	0	2	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0041	4475	2	0	2	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0042	4477	2	1	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0043	4475	2	2	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0044	4474	2	0	0	0	0	2	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0045	4475	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0046	4480	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0047	4478	1	0	0	0	0	1	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0048	4477	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0049	4477	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377