JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNC3_chr19_50306937_50334377	0/0	t0100	4468	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0101	4478	1	0	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0102	4472	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0103	4474	1	0	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0104	4478	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0105	4476	1	0	1	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0106	4477	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0107	4475	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0108	4474	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0109	4477	1	0	0	1	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0110	4477	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC3_chr19_50306937_50334377	0/0	t0111	4479	1	1	0	0	0	0	copy fasta	KCNC3	chr19	50306937	50334377
KCNC4_chr1_110205314_110239044	1/1	t0001	2259	206	21	41	111	6	25	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0002	2259	127	4	26	68	10	19	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0003	2259	41	32	0	7	2	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0004	2259	7	6	1	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0005	2259	7	7	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0006	2259	4	4	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0007	2259	3	0	0	3	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0008	2259	3	2	1	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0009	2260	3	3	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0010	2265	2	2	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0011	2259	2	0	0	0	0	2	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0012	2259	2	2	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0013	2259	1	0	1	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0014	2259	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0015	2259	1	0	1	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0016	2265	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0017	2265	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0018	2265	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0019	2259	1	0	0	0	0	1	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0020	2259	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0021	2259	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0022	2259	1	0	1	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0023	2259	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0024	2259	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0025	2259	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0026	2259	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0027	2259	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0028	2259	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0029	2259	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0030	2259	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0031	2259	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0032	2260	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0033	2259	1	1	0	0	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0034	2259	1	0	0	0	0	1	copy fasta	KCNC4	chr1	110205314	110239044
KCNC4_chr1_110205314_110239044	0/0	t0035	2259	1	0	0	1	0	0	copy fasta	KCNC4	chr1	110205314	110239044
KCND1_chrX_48956380_48976844	1/1	t0001	2775	179	67	40	47	8	15	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0002	2775	102	3	14	68	3	14	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0003	2775	3	3	0	0	0	0	copy fasta	KCND1	chrX	48956380	48976844