JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCND1_chrX_48956380_48976844	0/0	t0004	2775	2	2	0	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0005	2775	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0006	2775	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0007	2775	1	1	0	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0008	2777	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0009	2775	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0010	2774	1	1	0	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0011	2776	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0012	2774	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0013	2775	1	0	0	0	1	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0014	2775	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0015	2775	1	1	0	0	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0016	2776	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0017	2775	1	0	0	0	1	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0018	2775	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0019	2775	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0020	2775	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0021	2775	1	0	0	0	0	1	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0022	2776	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0023	2774	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND1_chrX_48956380_48976844	0/0	t0024	2777	1	0	0	1	0	0	copy fasta	KCND1	chrX	48956380	48976844
KCND2_chr7_120268175_120755337	0/0	t0001	3938	26	18	3	3	1	1	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	1/0	t0002	3938	8	2	3	1	1	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/1	t0003	3938	8	2	0	4	0	1	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0004	3938	5	5	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0005	3938	3	3	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0006	3938	3	2	1	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0007	3938	3	3	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0008	3938	2	2	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0009	3938	2	2	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0010	3937	2	2	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0011	3938	2	2	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0012	3938	1	0	0	0	1	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0013	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0014	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0015	3937	1	0	1	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0016	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0017	3938	1	0	1	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0018	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0019	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0020	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0021	3937	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0022	3938	1	0	1	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0023	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0024	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0025	3938	1	0	0	0	1	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0026	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND2_chr7_120268175_120755337	0/0	t0027	3938	1	1	0	0	0	0	copy fasta	KCND2	chr7	120268175	120755337
KCND3_chr1_111765662_111994668	0/0	t0001	5653	52	3	14	26	0	9	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0002	5653	32	4	9	14	1	4	copy fasta	KCND3	chr1	111765662	111994668