Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANO8_chr19_17318223_17339855	1/1	t0001	480	119	22	28	50	3	14	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0002	468	52	17	7	25	3	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0003	486	49	8	14	13	0	14	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0004	482	32	14	8	4	2	4	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0005	488	29	2	7	13	4	3	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0006	484	27	3	8	11	3	2	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0007	478	13	2	3	8	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0008	490	12	2	2	5	2	1	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0009	468	10	9	1	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0010	492	6	3	0	2	0	1	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0011	470	3	2	0	0	0	1	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0012	466	3	3	0	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0013	484	2	2	0	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0014	482	2	2	0	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0015	486	1	1	0	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0016	496	1	0	0	0	1	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0017	494	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0018	480	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	t0019	488	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO9_chr11_412938_447011	1/1	t0001	519	255	69	65	82	17	20	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	t0002	519	16	0	4	5	1	6	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	t0003	519	5	4	1	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	t0004	519	4	4	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	t0005	519	2	2	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	t0006	519	2	2	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	t0007	519	1	0	0	1	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	t0008	519	1	1	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANOS1_chrX_8523874_8737137	0/0	t0001	4223	47	11	10	23	0	3	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0002	4223	45	5	9	26	0	5	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0003	4223	30	6	8	7	3	6	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0004	4223	21	6	2	9	3	1	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0005	4223	20	4	2	13	1	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	1/1	t0006	4223	18	4	5	2	1	4	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0007	4223	4	4	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0008	4223	4	4	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0009	4223	3	2	1	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0010	4223	3	3	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0011	4223	3	3	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0012	4218	2	0	0	2	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0013	4223	2	2	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0014	4223	2	0	0	2	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0015	4223	2	0	2	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0016	4223	2	2	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0017	4223	2	0	2	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0018	4223	2	0	2	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0019	4222	1	0	0	1	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0020	4216	1	0	0	1	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0021	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0022	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0023	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137