JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCND3_chr1_111765662_111994668	1/1	t0003	5652	25	1	8	8	2	4	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0004	5652	17	17	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0005	5652	7	0	1	6	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0006	5652	7	1	3	1	1	1	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0007	5653	7	0	2	4	0	1	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0008	5651	6	6	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0009	5653	5	5	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0010	5652	4	3	1	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0011	5653	4	4	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0012	5651	4	4	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0013	5653	3	0	0	0	0	3	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0014	5652	3	3	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0015	5652	3	0	1	0	0	2	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0016	5653	3	0	0	3	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0017	5632	3	2	1	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0018	5653	2	0	0	2	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0019	5653	2	2	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0020	5655	2	2	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0021	5653	1	0	1	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0022	5653	1	0	1	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0023	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0024	5653	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0025	5652	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0026	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0027	5636	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0028	5654	1	0	0	0	0	1	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0029	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0030	5654	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0031	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0032	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0033	5651	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0034	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0035	5653	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0036	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0037	5652	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0038	5652	1	0	1	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0039	5652	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0040	5652	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0041	5652	1	0	1	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0042	5651	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0043	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0044	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0045	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0046	5653	1	0	0	1	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0047	5653	1	0	0	0	0	1	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0048	5652	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0049	5651	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0050	5653	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0051	5652	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668
KCND3_chr1_111765662_111994668	0/0	t0052	5652	1	1	0	0	0	0	copy fasta	KCND3	chr1	111765662	111994668