JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNE4_chr2_223047190_223060637	0/1	t0003	2405	12	5	2	0	1	3	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0004	2404	9	0	0	9	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0005	2404	8	7	1	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0006	2403	8	0	4	3	0	1	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0007	2404	7	2	1	1	1	2	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0008	2404	3	3	0	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0009	2405	3	2	1	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0010	2404	2	2	0	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0011	2405	1	0	0	0	0	1	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0012	2404	1	1	0	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0013	2405	1	0	0	1	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0014	2404	1	1	0	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0015	2404	1	1	0	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0016	2404	1	0	0	1	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0017	2404	1	0	0	1	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0018	2404	1	0	0	1	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0019	2404	1	0	1	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0020	2404	1	1	0	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE4_chr2_223047190_223060637	0/0	t0021	2403	1	1	0	0	0	0	copy fasta	KCNE4	chr2	223047190	223060637
KCNE5_chrX_109618700_109630172	0/1	t0001	1045	223	45	40	110	7	20	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	1/0	t0002	1045	42	2	8	18	4	9	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0003	1045	7	7	0	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0004	1045	6	6	0	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0005	1045	5	0	0	5	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0006	1045	2	0	2	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0007	1045	2	2	0	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0008	1045	2	2	0	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0009	1045	1	0	0	0	0	1	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0010	1045	1	1	0	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0011	1045	1	0	0	1	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0012	1045	1	1	0	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0013	1045	1	0	1	0	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNE5_chrX_109618700_109630172	0/0	t0014	1047	1	0	0	1	0	0	copy fasta	KCNE5	chrX	109618700	109630172
KCNF1_chr2_10906934_10919225	1/1	t0001	808	341	82	61	140	18	38	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0002	808	63	6	12	43	0	2	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0003	808	10	8	2	0	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0004	808	6	0	0	6	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0005	808	4	0	2	0	0	2	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0006	808	2	2	0	0	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0007	809	2	0	0	2	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0008	809	1	0	0	1	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0009	809	1	0	0	1	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0010	808	1	0	0	1	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0011	808	1	0	1	0	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0012	808	1	0	0	0	0	1	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0013	808	1	0	0	1	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0014	808	1	0	0	1	0	0	copy fasta	KCNF1	chr2	10906934	10919225
KCNF1_chr2_10906934_10919225	0/0	t0015	808	1	0	0	0	0	1	copy fasta	KCNF1	chr2	10906934	10919225
KCNG1_chr20_50998656_51028107	1/0	t0001	648	151	7	24	96	6	17	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/1	t0002	648	135	31	25	61	3	14	copy fasta	KCNG1	chr20	50998656	51028107