JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNG1_chr20_50998656_51028107	0/0	t0003	648	59	12	15	13	7	12	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0004	649	29	22	2	2	0	3	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0005	648	19	2	2	15	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0006	650	6	5	1	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0007	650	5	4	1	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0008	648	4	3	1	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0009	648	4	4	0	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0010	648	3	2	1	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0011	649	3	1	2	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0012	648	2	2	0	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0013	649	2	1	0	1	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0014	649	1	1	0	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG1_chr20_50998656_51028107	0/0	t0015	649	1	1	0	0	0	0	copy fasta	KCNG1	chr20	50998656	51028107
KCNG2_chr18_79792938_79905100	1/1	t0001	476	246	72	48	80	14	30	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	t0002	476	57	4	6	38	2	7	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	t0003	469	4	0	2	2	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	t0004	476	1	0	0	1	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	t0005	476	1	1	0	0	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	t0006	476	1	0	0	1	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	t0007	476	1	1	0	0	0	0	copy fasta	KCNG2	chr18	79792938	79905100
KCNG2_chr18_79792938_79905100	0/0	t0008	476	1	0	0	0	0	1	copy fasta	KCNG2	chr18	79792938	79905100
KCNG3_chr2_42437017_42498982	1/1	t0001	2399	99	37	20	23	7	10	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0002	2399	97	14	34	29	5	15	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0003	2399	90	4	13	61	4	8	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0004	2399	21	11	0	7	0	3	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0005	2399	6	6	0	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0006	2399	5	5	0	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0007	2399	5	5	0	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0008	2400	4	3	1	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0009	2399	2	0	2	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0010	2399	2	1	1	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0011	2399	1	0	0	1	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0012	2399	1	1	0	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0013	2399	1	0	0	0	0	1	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0014	2399	1	0	0	0	0	1	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0015	2399	1	0	0	1	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0016	2399	1	0	0	1	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0017	2399	1	0	1	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0018	2399	1	0	0	1	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0019	2399	1	0	0	1	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0020	2399	1	0	0	1	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG3_chr2_42437017_42498982	0/0	t0021	2399	1	1	0	0	0	0	copy fasta	KCNG3	chr2	42437017	42498982
KCNG4_chr16_84213657_84245012	0/0	t0001	3947	47	4	10	33	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0002	3941	26	0	3	18	0	5	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/1	t0003	3940	25	4	3	8	3	6	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0004	3940	23	7	7	9	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0005	3941	21	0	3	18	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0006	3946	20	5	2	12	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0007	3947	16	5	3	3	1	4	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0008	3947	14	0	1	10	1	2	copy fasta	KCNG4	chr16	84213657	84245012