JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNG4_chr16_84213657_84245012	0/0	t0109	3926	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0110	3947	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0111	3946	1	0	0	0	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0112	3941	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0113	3942	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0114	3940	1	0	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0115	3942	1	0	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0116	3939	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0117	3941	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0118	3948	1	0	0	0	0	1	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0119	3940	1	0	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0120	3939	1	0	1	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0121	3940	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0122	3941	1	1	0	0	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0123	3945	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNG4_chr16_84213657_84245012	0/0	t0124	3947	1	0	0	1	0	0	copy fasta	KCNG4	chr16	84213657	84245012
KCNH1_chr1_210673314_211139148	1/0	t0001	5171	37	7	10	14	3	2	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0002	5171	35	18	6	11	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0003	5170	19	1	10	2	1	5	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0004	5170	13	5	3	3	0	2	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0005	5171	11	11	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/1	t0006	5170	4	0	0	0	0	3	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0007	5193	3	0	2	1	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0008	5170	3	0	0	3	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0009	5169	3	3	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0010	5171	2	2	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0011	5169	2	0	0	2	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0012	5170	2	2	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0013	5170	2	2	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0014	5170	2	2	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0015	5171	2	2	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0016	5171	2	2	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0017	5148	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0018	5170	1	0	0	0	0	1	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0019	5169	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0020	5171	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0021	5171	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0022	5193	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0023	5170	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0024	5170	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0025	5170	1	0	0	1	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0026	5170	1	0	1	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0027	5171	1	0	0	0	0	1	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0028	5170	1	0	0	1	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0029	5171	1	0	0	1	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0030	5171	1	0	0	1	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0031	5171	1	0	1	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0032	5169	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0033	5171	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0034	5170	1	0	1	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148