JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNH1_chr1_210673314_211139148	0/0	t0035	5170	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0036	5171	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0037	5171	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH1_chr1_210673314_211139148	0/0	t0038	5171	1	1	0	0	0	0	copy fasta	KCNH1	chr1	210673314	211139148
KCNH2_chr7_150939961_150983321	1/1	t0001	813	339	78	68	135	16	40	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	t0002	813	7	7	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	t0003	813	4	0	0	4	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	t0004	813	3	0	0	3	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	t0005	813	2	2	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	t0006	813	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	t0007	813	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH2_chr7_150939961_150983321	0/0	t0008	813	1	1	0	0	0	0	copy fasta	KCNH2	chr7	150939961	150983321
KCNH3_chr12_49534030_49563337	1/1	t0001	772	235	73	45	68	13	34	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	t0002	772	23	12	5	3	1	2	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	t0003	772	3	0	0	3	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	t0004	772	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	t0005	772	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH3_chr12_49534030_49563337	0/0	t0006	772	1	1	0	0	0	0	copy fasta	KCNH3	chr12	49534030	49563337
KCNH4_chr17_42151891_42186142	1/1	t0001	735	323	87	56	136	8	34	copy fasta	KCNH4	chr17	42151891	42186142
KCNH4_chr17_42151891_42186142	0/0	t0002	735	3	3	0	0	0	0	copy fasta	KCNH4	chr17	42151891	42186142
KCNH5_chr14_62694464_63050458	0/1	t0001	8317	41	0	10	25	2	3	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0002	8317	34	1	4	27	2	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0003	8317	24	12	3	8	0	1	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0004	8317	15	1	4	10	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0005	8317	11	5	1	5	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0006	8317	7	7	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0007	8317	6	0	3	1	0	2	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	1/0	t0008	8317	6	5	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0009	8317	5	5	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0010	8317	4	0	0	3	1	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0011	8317	4	2	1	0	0	1	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0012	8317	4	0	3	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0013	8317	4	4	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0014	8317	3	0	2	0	1	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0015	8317	3	0	0	2	1	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0016	8317	3	1	2	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0017	8317	3	2	1	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0018	8317	3	3	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0019	8317	2	0	2	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0020	8327	2	0	0	2	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0021	8317	2	2	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0022	8317	2	0	0	1	0	1	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0023	8317	2	2	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0024	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0025	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0026	8317	1	0	0	0	0	1	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0027	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0028	8317	1	0	0	0	1	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0029	8317	1	0	1	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0030	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458