JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNH5_chr14_62694464_63050458	0/0	t0031	8317	1	0	1	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0032	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0033	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0034	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0035	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0036	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0037	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0038	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0039	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0040	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0041	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0042	8317	1	0	1	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0043	8317	1	0	1	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0044	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0045	8317	1	0	0	0	0	1	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0046	8317	1	0	1	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0047	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0048	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0049	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0050	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0051	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0052	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0053	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0054	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0055	8317	1	0	1	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0056	8317	1	0	0	1	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH5_chr14_62694464_63050458	0/0	t0057	8317	1	1	0	0	0	0	copy fasta	KCNH5	chr14	62694464	63050458
KCNH6_chr17_63518358_63551727	0/1	t0001	882	150	56	26	44	9	14	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	1/0	t0002	882	137	20	33	65	6	12	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	t0003	883	13	1	0	9	0	3	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	t0004	881	9	8	1	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	t0005	883	5	0	1	3	0	1	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	t0006	881	4	1	0	3	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	t0007	882	2	1	1	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	t0008	882	1	0	0	0	0	1	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	t0009	882	1	1	0	0	0	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	t0010	882	1	0	0	0	0	1	copy fasta	KCNH6	chr17	63518358	63551727
KCNH6_chr17_63518358_63551727	0/0	t0011	882	1	0	0	0	1	0	copy fasta	KCNH6	chr17	63518358	63551727
KCNH7_chr2_162366407_162843767	1/1	t0001	672	98	57	10	29	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	t0002	672	1	1	0	0	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH7_chr2_162366407_162843767	0/0	t0003	672	1	0	0	1	0	0	copy fasta	KCNH7	chr2	162366407	162843767
KCNH8_chr3_19143510_19540642	1/1	t0001	1754	97	43	14	18	8	12	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	t0002	1754	22	7	1	12	0	2	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	t0003	1754	4	0	4	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	t0004	1754	3	3	0	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	t0005	1754	3	0	3	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	t0006	1754	1	1	0	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	t0007	1754	1	1	0	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	t0008	1754	1	1	0	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNH8_chr3_19143510_19540642	0/0	t0009	1754	1	0	1	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642