Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANOS1_chrX_8523874_8737137	0/0	t0024	4223	1	0	0	0	1	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0025	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0026	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0027	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0028	4223	1	0	1	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0029	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0030	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0031	4223	1	0	0	1	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0032	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0033	4223	1	0	0	0	0	1	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0034	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0035	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0036	4223	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	t0037	4223	1	0	1	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANP32A_chr15_68773535_68825895	1/1	t0001	1691	249	50	43	126	6	22	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0002	1692	63	10	7	38	2	6	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0003	1692	9	9	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0004	1691	4	3	0	1	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0005	1692	4	2	0	2	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0006	1691	4	4	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0007	1692	4	4	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0008	1691	3	0	0	3	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0009	1691	3	3	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0010	1688	2	2	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0011	1687	2	2	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0012	1692	1	0	0	1	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0013	1693	1	1	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0014	1689	1	1	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0015	1693	1	1	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0016	1688	1	1	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0017	1691	1	0	0	1	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32A_chr15_68773535_68825895	0/0	t0018	1691	1	1	0	0	0	0	copy fasta	ANP32A	chr15	68773535	68825895
ANP32B_chr9_97978341_98020943	1/1	t0001	728	281	62	55	112	14	36	copy fasta	ANP32B	chr9	97978341	98020943
ANP32B_chr9_97978341_98020943	0/0	t0002	730	28	24	3	1	0	0	copy fasta	ANP32B	chr9	97978341	98020943
ANP32B_chr9_97978341_98020943	0/0	t0003	728	1	0	0	1	0	0	copy fasta	ANP32B	chr9	97978341	98020943
ANP32D_chr12_48467559_48478622	1/0	t0001	669	272	73	58	90	16	34	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	t0002	670	153	15	22	106	2	8	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	t0003	666	4	4	0	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	t0004	669	2	0	2	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	t0005	669	1	0	1	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	t0006	670	1	0	1	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/1	t0007	669	1	0	0	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32E_chr1_150213417_150241112	0/1	t0001	2603	284	38	53	149	14	29	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0002	2604	14	4	3	5	0	2	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0003	2607	13	13	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0004	2607	9	9	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0005	2603	9	9	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0006	2605	8	8	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0007	2602	7	4	0	3	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0008	2600	6	5	0	1	0	0	copy fasta	ANP32E	chr1	150213417	150241112