JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNH8_chr3_19143510_19540642	0/0	t0010	1754	1	0	1	0	0	0	copy fasta	KCNH8	chr3	19143510	19540642
KCNIP1_chr5_170499020_170741632	0/0	t0001	1380	62	13	10	31	1	7	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0002	1380	53	20	10	5	5	13	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0003	1380	41	14	3	17	1	6	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0004	1380	14	4	8	0	1	1	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0005	1380	8	3	2	1	0	2	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0006	1380	6	6	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0007	1380	5	1	2	2	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0008	1380	5	0	5	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0009	1380	3	3	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0010	1387	2	2	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0011	1380	2	0	0	0	0	2	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0012	1380	2	2	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0013	1387	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0014	1387	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0015	1387	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0016	1387	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0017	1387	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0018	1380	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0019	1380	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0020	1380	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0021	1380	1	0	1	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0022	1380	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0023	1380	1	0	1	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0024	1380	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0025	1380	1	0	0	0	0	1	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0026	1380	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP1_chr5_170499020_170741632	0/0	t0027	1380	1	1	0	0	0	0	copy fasta	KCNIP1	chr5	170499020	170741632
KCNIP2_chr10_101820974_101848800	1/1	t0001	1612	157	51	26	39	8	31	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0002	1612	131	21	17	83	3	7	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0003	1612	66	2	23	35	5	1	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0004	1612	8	0	0	8	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0005	1612	7	0	5	2	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0006	1612	3	0	0	3	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0007	1612	2	0	0	2	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0008	1612	2	0	1	0	0	1	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0009	1612	1	0	0	1	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0010	1612	1	0	0	1	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0011	1612	1	1	0	0	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0012	1612	1	0	0	1	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0013	1612	1	0	0	1	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP2_chr10_101820974_101848800	0/0	t0014	1612	1	1	0	0	0	0	copy fasta	KCNIP2	chr10	101820974	101848800
KCNIP3_chr2_95292347_95391077	0/0	t0001	2123	74	14	10	37	0	13	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0002	2127	60	8	17	30	1	4	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	1/1	t0003	2121	53	12	6	21	3	9	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0004	2125	21	2	2	14	0	3	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0005	2123	20	10	3	7	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0006	2131	13	0	9	2	0	2	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0007	2129	13	1	4	6	0	2	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0008	2123	11	0	0	11	0	0	copy fasta	KCNIP3	chr2	95292347	95391077