JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNIP3_chr2_95292347_95391077	0/0	t0009	2123	4	0	4	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0010	2119	4	3	1	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0011	2121	3	3	0	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0012	2125	2	2	0	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0013	2121	2	0	0	2	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0014	2123	1	1	0	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0015	2133	1	0	0	1	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0016	2131	1	1	0	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0017	2127	1	1	0	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0018	2125	1	0	0	1	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0019	2125	1	0	0	1	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0020	2123	1	0	1	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0021	2123	1	0	0	1	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0022	2123	1	0	0	1	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0023	2121	1	0	0	1	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0024	2121	1	0	0	1	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0025	2121	1	0	1	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0026	2121	1	1	0	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0027	2119	1	1	0	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0028	2119	1	0	0	1	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0029	2119	1	1	0	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0030	2121	1	1	0	0	0	0	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP3_chr2_95292347_95391077	0/0	t0031	2121	1	0	0	0	0	1	copy fasta	KCNIP3	chr2	95292347	95391077
KCNIP4_chr4_20723606_21953772	0/0	t0001	1618	28	17	2	5	2	2	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0002	1595	11	7	2	0	0	2	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0003	1633	10	4	2	2	1	1	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0004	1602	9	5	1	1	1	1	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0005	1602	4	4	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0006	1635	4	2	2	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0007	1618	3	3	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0008	1636	3	2	1	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0009	1644	2	2	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0010	1602	1	1	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0011	1618	1	1	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0012	1618	1	1	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0013	1613	1	1	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0014	1631	1	1	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNIP4_chr4_20723606_21953772	0/0	t0015	1602	1	1	0	0	0	0	copy fasta	KCNIP4	chr4	20723606	21953772
KCNJ10_chr1_160032467_160075160	0/0	t0001	4068	64	1	8	50	0	5	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/1	t0002	4058	49	7	7	21	1	12	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0003	4062	49	16	11	18	0	4	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0004	4066	47	0	4	38	0	5	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0005	4052	20	0	7	7	3	3	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0006	4060	15	3	4	4	2	2	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0007	4064	13	1	1	5	2	4	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0008	4066	11	10	1	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0009	4064	10	5	4	1	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0010	4066	9	0	5	4	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0011	4068	9	4	1	4	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0012	4070	9	1	3	3	1	1	copy fasta	KCNJ10	chr1	160032467	160075160