JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ10_chr1_160032467_160075160	0/0	t0063	4068	1	1	0	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0064	4062	1	0	0	1	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0065	4068	1	1	0	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0066	4052	1	1	0	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0067	4062	1	1	0	0	0	0	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ10_chr1_160032467_160075160	0/0	t0068	4066	1	0	0	0	0	1	copy fasta	KCNJ10	chr1	160032467	160075160
KCNJ11_chr11_17380248_17393659	0/0	t0001	2239	195	39	32	100	6	18	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	1/0	t0002	2240	106	1	17	65	6	16	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/1	t0003	2240	97	30	28	24	2	12	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0004	2240	4	4	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0005	2239	3	3	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0006	2240	3	2	1	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0007	2239	2	0	0	2	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0008	2239	1	1	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0009	2239	1	1	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0010	2239	1	0	0	0	0	1	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0011	2239	1	1	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0012	2239	1	1	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0013	2240	1	0	0	0	0	1	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0014	2240	1	1	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0015	2240	1	1	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0016	2240	1	1	0	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0017	2240	1	0	1	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0018	2240	1	0	0	1	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ11_chr11_17380248_17393659	0/0	t0019	2240	1	0	1	0	0	0	copy fasta	KCNJ11	chr11	17380248	17393659
KCNJ12_chr17_21371357_21424870	0/0	t0001	3962	79	14	16	28	5	16	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/1	t0002	3962	62	1	6	46	0	8	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0003	3964	30	6	4	15	2	3	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	1/0	t0004	3962	28	0	7	10	4	6	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0005	3962	25	1	10	13	1	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0006	3932	20	18	2	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0007	3964	17	0	0	16	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0008	3958	8	7	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0009	3964	7	0	5	2	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0010	3932	6	6	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0011	3962	5	2	2	0	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0012	3961	5	5	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0013	3960	4	0	4	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0014	3934	4	4	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0015	3962	3	0	3	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0016	3931	3	3	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0017	3962	3	0	2	0	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0018	3962	2	0	2	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0019	3962	2	0	2	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0020	3970	2	0	0	2	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0021	3962	2	0	1	0	1	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0022	3953	2	1	1	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0023	3962	2	2	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0024	3962	2	0	1	0	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0025	3956	2	2	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870