JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ12_chr17_21371357_21424870	0/0	t0026	3966	2	0	0	2	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0027	3960	2	0	0	1	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0028	3954	2	2	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0029	3962	2	2	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0030	3932	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0031	3934	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0032	3958	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0033	3962	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0034	3962	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0035	3956	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0036	3964	1	0	1	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0037	3930	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0038	3934	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0039	3954	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0040	3962	1	0	1	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0041	3962	1	0	0	0	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0042	3958	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0043	3966	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0044	3958	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0045	3964	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0046	3962	1	0	1	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0047	3962	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0048	3959	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0049	3959	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0050	3933	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0051	3954	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0052	3962	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0053	3964	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0054	3960	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0055	3962	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0056	3990	1	0	0	0	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0057	3970	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0058	3962	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0059	3962	1	0	0	0	1	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0060	3958	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0061	3962	1	0	1	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0062	3964	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0063	3966	1	0	0	0	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0064	3970	1	0	0	0	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0065	3962	1	0	0	0	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0066	3932	1	0	1	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0067	3960	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0068	3926	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0069	3964	1	0	0	0	0	1	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0070	3964	1	0	0	1	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0071	3962	1	0	1	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ12_chr17_21371357_21424870	0/0	t0072	3962	1	1	0	0	0	0	copy fasta	KCNJ12	chr17	21371357	21424870
KCNJ13_chr2_232760802_232781565	1/1	t0001	2527	243	50	44	117	7	23	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0002	2525	69	18	5	40	2	4	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0003	2527	58	7	8	29	1	13	copy fasta	KCNJ13	chr2	232760802	232781565