JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ13_chr2_232760802_232781565	0/0	t0004	2527	52	10	11	24	2	5	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0005	2527	5	0	5	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0006	2527	3	1	2	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0007	2527	2	2	0	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0008	2527	2	0	2	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0009	2527	2	1	1	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0010	2525	2	2	0	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0011	2527	1	1	0	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0012	2527	1	0	0	0	0	1	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0013	2527	1	0	0	1	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0014	2527	1	1	0	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0015	2527	1	1	0	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0016	2525	1	1	0	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0017	2525	1	1	0	0	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ13_chr2_232760802_232781565	0/0	t0018	2525	1	0	0	1	0	0	copy fasta	KCNJ13	chr2	232760802	232781565
KCNJ14_chr19_48450574_48471980	0/0	t0001	2544	198	38	44	84	5	27	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0002	2544	97	5	7	75	2	8	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0003	2545	12	10	1	1	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0004	2544	11	2	1	7	0	1	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0005	2544	9	9	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0006	2544	8	4	4	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0007	2544	6	6	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0008	2543	6	0	4	2	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0009	2544	5	5	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0010	2544	4	1	2	0	0	1	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0011	2544	4	2	2	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0012	2544	3	0	0	3	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0013	2543	3	0	0	3	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0014	2543	3	0	0	3	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0015	2545	2	0	0	2	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0016	2544	2	1	1	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0017	2543	2	2	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0018	2544	2	0	2	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0019	2544	1	0	1	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0020	2544	1	0	1	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0021	2543	1	1	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0022	2544	1	0	0	1	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0023	2544	1	1	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0024	2544	1	0	0	1	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0025	2543	1	0	0	1	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0026	2544	1	0	0	0	0	1	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0027	2544	1	0	0	0	1	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0028	2544	1	0	1	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0029	2544	1	1	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0030	2544	1	0	1	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0031	2544	1	1	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0032	2543	1	1	0	0	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ14_chr19_48450574_48471980	0/0	t0033	2544	1	0	0	1	0	0	copy fasta	KCNJ14	chr19	48450574	48471980
KCNJ15_chr21_38251991_38312357	0/1	t0001	7271	48	0	6	37	1	3	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0002	7281	43	1	7	26	3	6	copy fasta	KCNJ15	chr21	38251991	38312357