JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ15_chr21_38251991_38312357	0/0	t0053	7278	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0054	7283	1	0	1	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	1/0	t0055	7280	1	0	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0056	7280	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0057	7283	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0058	7287	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0059	7281	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0060	7277	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0061	7276	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0062	7276	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0063	7276	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0064	7282	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0065	7262	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0066	7260	1	0	1	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0067	7259	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0068	7266	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0069	7260	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0070	7263	1	0	1	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0071	7258	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0072	7261	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0073	7257	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0074	7285	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0075	7270	1	0	0	0	0	1	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0076	7272	1	0	0	0	0	1	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0077	7271	1	0	0	0	0	1	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0078	7270	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0079	7272	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0080	7271	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0081	7277	1	0	0	0	0	1	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0082	7278	1	0	0	0	0	1	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0083	7294	1	0	0	0	0	1	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0084	7296	1	0	0	0	0	1	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0085	7264	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0086	7269	1	0	0	0	1	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0087	7272	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0088	7271	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0089	7295	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0090	7293	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0091	7295	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0092	7294	1	0	1	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0093	7294	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0094	7289	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0095	7295	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0096	7295	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0097	7295	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0098	7295	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0099	7295	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0100	7295	1	0	0	0	0	1	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0101	7295	1	0	1	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0102	7294	1	0	1	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357