JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ15_chr21_38251991_38312357	0/0	t0103	7295	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0104	7293	1	0	0	0	0	1	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0105	7261	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0106	7262	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0107	7263	1	1	0	0	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ15_chr21_38251991_38312357	0/0	t0108	7281	1	0	0	1	0	0	copy fasta	KCNJ15	chr21	38251991	38312357
KCNJ16_chr17_70070225_70140608	1/1	t0001	2730	126	29	26	48	7	14	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0002	2731	113	30	13	62	2	6	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0003	2733	30	3	12	8	1	6	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0004	2730	18	16	2	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0005	2729	4	2	1	0	0	1	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0006	2730	3	3	0	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0007	2731	3	3	0	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0008	2730	3	0	0	1	0	2	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0009	2730	2	2	0	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0010	2733	2	2	0	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0011	2733	2	0	1	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0012	2730	2	0	2	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0013	2731	2	0	0	2	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0014	2730	2	0	2	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0015	2730	1	1	0	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0016	2731	1	0	1	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0017	2729	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0018	2730	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0019	2730	1	0	0	0	0	1	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0020	2733	1	1	0	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0021	2730	1	0	0	0	0	1	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0022	2729	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0023	2731	1	1	0	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0024	2733	1	0	0	0	0	1	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0025	2730	1	0	1	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0026	2730	1	0	0	0	0	1	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0027	2733	1	0	1	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0028	2730	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0029	2731	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0030	2730	1	0	0	0	0	1	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0031	2731	1	0	0	1	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ16_chr17_70070225_70140608	0/0	t0032	2731	1	1	0	0	0	0	copy fasta	KCNJ16	chr17	70070225	70140608
KCNJ18_chr17_21687523_21709612	0/0	t0001	896	53	1	5	44	0	3	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0002	900	16	0	2	13	0	1	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0003	899	15	0	1	14	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	1/1	t0004	895	13	2	0	9	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0005	897	6	0	0	6	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0006	895	2	1	0	0	1	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0007	897	1	0	0	0	1	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0008	895	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0009	900	1	1	0	0	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0010	882	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0011	895	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ18_chr17_21687523_21709612	0/0	t0012	900	1	0	0	1	0	0	copy fasta	KCNJ18	chr17	21687523	21709612