JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KCNJ18_chr17_21687523_21709612	0/0	t0013	895	1	1	0	0	0	0	copy fasta	KCNJ18	chr17	21687523	21709612
KCNJ1_chr11_128833020_128872296	0/0	t0001	1421	216	33	44	111	10	18	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0002	1424	25	1	4	10	1	9	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	1/0	t0003	1421	20	11	3	1	1	3	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0004	1424	13	4	2	4	0	3	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0005	1421	12	11	1	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0006	1421	3	1	2	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0007	1421	3	0	0	0	0	3	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0008	1421	2	0	0	2	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0009	1421	1	1	0	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0010	1421	1	1	0	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0011	1421	1	0	0	1	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0012	1421	1	1	0	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0013	1424	1	1	0	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0014	1421	1	0	0	1	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ1_chr11_128833020_128872296	0/0	t0015	1424	1	1	0	0	0	0	copy fasta	KCNJ1	chr11	128833020	128872296
KCNJ2_chr17_70164532_70185044	0/0	t0001	4107	72	5	14	35	6	12	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0002	4103	45	6	1	35	0	3	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	1/0	t0003	4108	43	5	8	21	1	7	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0004	4109	36	7	6	20	1	2	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0005	4110	27	3	4	16	0	4	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0006	4105	16	1	3	6	0	6	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0007	4108	15	2	4	7	2	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/1	t0008	4106	11	0	0	8	1	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0009	4109	11	1	3	5	1	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0010	4104	10	10	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0011	4107	9	3	1	4	0	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0012	4105	9	1	5	1	0	2	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0013	4111	9	1	2	5	1	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0014	4107	8	0	5	1	0	2	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0015	4108	7	2	0	5	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0016	4106	7	0	1	6	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0017	4107	6	1	1	3	1	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0018	4103	5	3	2	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0019	4112	5	4	0	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0020	4103	4	4	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0021	4105	4	1	3	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0022	4104	4	1	2	1	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0023	4106	4	4	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0024	4095	4	0	0	3	0	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0025	4117	4	4	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0026	4107	3	0	2	0	1	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0027	4103	3	1	0	2	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0028	4104	3	1	0	2	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0029	4108	3	0	2	0	0	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0030	4108	2	2	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0031	4103	2	2	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0032	4105	2	0	0	2	0	0	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0033	4106	2	0	0	1	0	1	copy fasta	KCNJ2	chr17	70164532	70185044
KCNJ2_chr17_70164532_70185044	0/0	t0034	4104	2	2	0	0	0	0	copy fasta	KCNJ2	chr17	70164532	70185044