Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANP32E_chr1_150213417_150241112	0/0	t0009	2603	3	0	0	3	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0010	2607	2	2	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0011	2603	2	0	0	2	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0012	2595	1	1	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0013	2600	1	1	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0014	2602	1	0	0	1	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0015	2603	1	1	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0016	2587	1	0	0	1	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0017	2603	1	0	0	1	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0018	2603	1	0	0	1	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0019	2603	1	0	1	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0020	2603	1	0	1	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0021	2604	1	1	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0022	2604	1	0	0	1	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	1/0	t0023	2601	1	0	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	t0024	2604	1	0	0	0	0	1	copy fasta	ANP32E	chr1	150213417	150241112
ANPEP_chr15_89779895_89819852	1/1	t0001	759	196	12	36	123	7	16	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0002	759	162	64	29	39	9	21	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0003	759	16	10	4	0	1	1	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0004	759	13	1	3	0	0	9	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0005	759	3	3	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0006	759	3	1	2	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0007	759	2	2	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0008	759	2	2	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0009	759	1	0	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0010	759	1	0	0	0	1	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0011	759	1	1	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0012	759	1	1	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0013	759	1	0	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0014	759	1	0	0	0	0	1	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	t0015	759	1	1	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANTKMT_chr16_716146_727590	1/0	t0001	163	323	60	64	154	10	34	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/1	t0002	163	52	21	11	3	4	12	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	t0003	163	17	15	1	1	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTXR1_chr2_69008179_69254327	1/0	t0001	4164	102	16	19	53	3	10	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0002	4163	18	1	6	8	0	3	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0003	4163	16	7	0	8	0	1	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0004	4158	14	12	2	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/1	t0005	4161	6	1	1	0	2	1	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0006	4163	5	3	0	1	0	1	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0007	4163	5	5	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0008	4164	4	4	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0009	4163	3	3	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0010	4144	3	1	0	2	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0011	4163	2	2	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0012	4164	2	2	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0013	4164	2	2	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0014	4164	2	2	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0015	4163	2	1	1	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	t0016	4164	2	2	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327